If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ), 'gf_id' => 'HOM05D000962', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000962' ), 'data_identifier' => 'HOM05D000962', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000962', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '621', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38610' => 'bna', 'A02p10820' => 'bna', 'A02p23550' => 'bna', 'A03p03870' => 'bna', 'A04p25980' => 'bna', 'A05p11790' => 'bna', 'A05p34180' => 'bna', 'A07p11370' => 'bna', 'A07p26670' => 'bna', 'A07p45240' => 'bna', 'A08p25700' => 'bna', 'A10p11210' => 'bna', 'Aa31LG3G10090' => 'aar', 'Aa31LG3G18060' => 'aar', 'Aa31LG4G710' => 'aar', 'Aa31LG6G10090' => 'aar', 'Aa31LG8G2480' => 'aar', 'Aa31LG9G13700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1158' => 'aag', 'Actinidia01730' => 'ach', 'Actinidia11086' => 'ach', 'Actinidia18217' => 'ach', 'Actinidia18768' => 'ach', 'Actinidia35246' => 'ach', 'Actinidia39466' => 'ach', 'Ah.01g020460' => 'amhyb', 'Ah.04g164790' => 'amhyb', 'Ah.06g184420' => 'amhyb', 'Ah.06g188220' => 'amhyb', 'Ah.14g089510' => 'amhyb', 'AL1G41830' => 'aly', 'AL2G41050' => 'aly', 'AL3G27690' => 'aly', 'AL4G29490' => 'aly', 'AL6G18950' => 'aly', 'AL8G28890' => 'aly', 'Aqoxy1G02382' => 'aox', 'Aqoxy4G00737' => 'aox', 'Aqoxy5G01858' => 'aox', 'Aqoxy7G03302' => 'aox', 'arahy.Tifrunner.gnm1.ann1.316ADJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FTB40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI212M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CMZ6V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N3RGE8' => 'arhy', 'AT1G28280' => 'ath', 'AT1G80450' => 'ath', 'AT2G33780' => 'ath', 'AT3G15300' => 'ath', 'AT5G08480' => 'ath', 'AT5G53830' => 'ath', 'ATR0580G111' => 'atr', 'ATR1089G124' => 'atr', 'Atru.chr1.2870' => 'acertr', 'Atru.chr10.1861' => 'acertr', 'Atru.chr2.2484' => 'acertr', 'Atru.chr7.2577' => 'acertr', 'AUR62011501' => 'cqu', 'AUR62017026' => 'cqu', 'BcaB01g05592' => 'bca', 'BcaB02g07271' => 'bca', 'BcaB02g07272' => 'bca', 'BcaB02g07273' => 'bca', 'BcaB02g08685' => 'bca', 'BcaB02g10592' => 'bca', 'BcaB03g13939' => 'bca', 'BcaB03g13940' => 'bca', 'BcaB04g20938' => 'bca', 'BcaB05g22078' => 'bca', 'BcaB05g25269' => 'bca', 'BcaB06g29555' => 'bca', 'BcaB08g35741' => 'bca', 'BcaB08g37255' => 'bca', 'BcaC01g00034' => 'bca', 'BcaC02g07776' => 'bca', 'BcaC02g11455' => 'bca', 'BcaC03g14382' => 'bca', 'BcaC03g15967' => 'bca', 'BcaC04g20414' => 'bca', 'BcaC05g28995' => 'bca', 'BcaC05g28996' => 'bca', 'BcaC05g28997' => 'bca', 'BcaC06g35348' => 'bca', 'BcaC08g45313' => 'bca', 'BcaC08g45314' => 'bca', 'BcaC08g47590' => 'bca', 'BcaC09g48485' => 'bca', 'BcaNung04380' => 'bca', 'BolC1t04888H' => 'bol', 'BolC2t07924H' => 'bol', 'BolC2t09742H' => 'bol', 'BolC3t12969H' => 'bol', 'BolC3t19751H' => 'bol', 'BolC4t23108H' => 'bol', 'BolC4t27802H' => 'bol', 'BolC5t33878H' => 'bol', 'BolC6t38079H' => 'bol', 'BolC6t40421H' => 'bol', 'BolC7t42220H' => 'bol', 'BolC9t57266H' => 'bol', 'BolC9t59596H' => 'bol', 'BraA01t03923Z' => 'bra', 'BraA02t06144Z' => 'bra', 'BraA02t07348Z' => 'bra', 'BraA03t09734Z' => 'bra', 'BraA03t10066Z' => 'bra', 'BraA04t18101Z' => 'bra', 'BraA05t20122Z' => 'bra', 'BraA05t22238Z' => 'bra', 'BraA07t28925Z' => 'bra', 'BraA07t30310Z' => 'bra', 'BraA07t32028Z' => 'bra', 'BraA08t34520Z' => 'bra', 'BraA10t43215Z' => 'bra', 'BraA10t44875Z' => 'bra', 'C01p49290' => 'bna', 'C02p03630' => 'bna', 'C02p17930' => 'bna', 'C02p37320' => 'bna', 'C03p04380' => 'bna', 'C03p75000' => 'bna', 'C04p15340' => 'bna', 'C04p63280' => 'bna', 'C05p51910' => 'bna', 'C06p23920' => 'bna', 'C06p29150' => 'bna', 'C06p54080' => 'bna', 'C07p17150' => 'bna', 'C09p43820' => 'bna', 'CAN.G162.51' => 'can', 'CAN.G407.12' => 'can', 'CAN.G529.11' => 'can', 'CANSAT01G2095' => 'cansat', 'CANSAT25G2500' => 'cansat', 'CANSAT35G0752' => 'cansat', 'CANSAT56G2783' => 'cansat', 'CANSAT56G4324' => 'cansat', 'CARHR027770' => 'chi', 'CARHR074800' => 'chi', 'CARHR090280' => 'chi', 'CARHR127860' => 'chi', 'CARHR127880' => 'chi', 'CARHR204510' => 'chi', 'CARHR266970' => 'chi', 'Carub.0001s2672' => 'cru', 'Carub.0002s2713' => 'cru', 'Carub.0003s1495' => 'cru', 'Carub.0004s1543' => 'cru', 'Carub.0006s0740' => 'cru', 'Carub.0008s1412' => 'cru', 'Ca_03506_v3' => 'car', 'Ca_18553_v3' => 'car', 'Cc02_g13510' => 'ccan', 'Cc05_g11950' => 'ccan', 'Cc08_g07660' => 'ccan', 'CDE02G0979' => 'cde', 'CDE02G2606' => 'cde', 'CDE03G0212' => 'cde', 'CDE04G0569' => 'cde', 'CDE05G2867' => 'cde', 'CDE09G1111' => 'cde', 'CDE10G1111' => 'cde', 'CDE10G1364' => 'cde', 'Cfa000486' => 'cfa', 'Cfa001942' => 'cfa', 'Cfa019319' => 'cfa', 'Cfa019320' => 'cfa', 'Cfa020574' => 'cfa', 'Ciclev10009260m.g' => 'ccl', 'Ciclev10009660m.g' => 'ccl', 'Ciclev10016465m.g' => 'ccl', 'Ciclev10026439m.g' => 'ccl', 'Ciclev10026619m.g' => 'ccl', 'CiPaw.01G250000' => 'cil', 'CiPaw.05G138100' => 'cil', 'CiPaw.07G233100' => 'cil', 'CiPaw.09G061000' => 'cil', 'CiPaw.10G049900' => 'cil', 'CiPaw.10G067000' => 'cil', 'CiPaw.11G170400' => 'cil', 'CiPaw.12G119000' => 'cil', 'CiPaw.16G119300' => 'cil', 'ClCG00G005460' => 'cla', 'ClCG01G023050' => 'cla', 'ClCG03G008170' => 'cla', 'ClCG04G002670' => 'cla', 'ClCG05G016130' => 'cla', 'ClCG09G003060' => 'cla', 'ClCG11G018030' => 'cla', 'COL.COLO4_11894' => 'col', 'COL.COLO4_18977' => 'col', 'COL.COLO4_27182' => 'col', 'COL.COLO4_31455' => 'col', 'Cpa.g.sc148.43' => 'cpa', 'Cpa.g.sc27.38' => 'cpa', 'Cpa.g.sc80.75' => 'cpa', 'CsaV3_1G012380' => 'csa', 'CsaV3_4G030030' => 'csa', 'CsaV3_4G033650' => 'csa', 'CsaV3_4G036400' => 'csa', 'CsaV3_6G050180' => 'csa', 'CsaV3_7G032250' => 'csa', 'CSS0006118' => 'camsi', 'CSS0006559' => 'camsi', 'CSS0008885' => 'camsi', 'CSS0010652' => 'camsi', 'CSS0012392' => 'camsi', 'CSS0032000' => 'camsi', 'CSS0032268' => 'camsi', 'CSS0038826' => 'camsi', 'CSS0041178' => 'camsi', 'DCAR_004068' => 'dca', 'DCAR_016274' => 'dca', 'DCAR_019562' => 'dca', 'DCAR_021355' => 'dca', 'DCAR_028062' => 'dca', 'Dinv03405' => 'din', 'Dinv10849' => 'din', 'Dinv13399' => 'din', 'Dinv14924' => 'din', 'Dinv16423' => 'din', 'Dinv20181' => 'din', 'Dinv30628' => 'din', 'Dinv31407' => 'din', 'Dinv40572' => 'din', 'Duzib147G0606' => 'dzi', 'Duzib160G0501' => 'dzi', 'Duzib168G0578' => 'dzi', 'Duzib170G0671' => 'dzi', 'Duzib187G0160' => 'dzi', 'Duzib192G0640' => 'dzi', 'Duzib213G0353' => 'dzi', 'Duzib235G0764' => 'dzi', 'Duzib235G1426' => 'dzi', 'Duzib268G1801' => 'dzi', 'ECA232G4256' => 'eca', 'ECA234G3645' => 'eca', 'ECA236G0871' => 'eca', 'ECA236G3555' => 'eca', 'ECA247G0368' => 'eca', 'EL10Ac4g08197' => 'bvu', 'EL10Ac8g20393' => 'bvu', 'EL10Ac9g21888' => 'bvu', 'Eucgr.F01148' => 'egr', 'Eucgr.F03907' => 'egr', 'Eucgr.I00016' => 'egr', 'FAN02G1805' => 'fan', 'FAN05G1899' => 'fan', 'FAN09G4050' => 'fan', 'FAN11G1840' => 'fan', 'FAN11G2085' => 'fan', 'FAN14G0490' => 'fan', 'FAN16G1849' => 'fan', 'FAN16G3105' => 'fan', 'FAN21G0815' => 'fan', 'FAN21G0990' => 'fan', 'FAN23G1702' => 'fan', 'FAN25G2284' => 'fan', 'FAN25G3318' => 'fan', 'FAN28G2825' => 'fan', 'FvH4_1g25800' => 'fve', 'FvH4_3g09030' => 'fve', 'FvH4_3g19800' => 'fve', 'FvH4_6g29370' => 'fve', 'Glyma.05G198400' => 'gma', 'Glyma.06G240300' => 'gma', 'Glyma.07G028700' => 'gma', 'Glyma.07G198000' => 'gma', 'Glyma.08G005700' => 'gma', 'Glyma.08G214100' => 'gma', 'Glyma.12G153600' => 'gma', 'Glyma.12G225200' => 'gma', 'Glyma.13G178500' => 'gma', 'Glyma.13G238100' => 'gma', 'Glyma.13G276100' => 'gma', 'Glyma.15G075200' => 'gma', 'Gohir.A01G063100' => 'ghi', 'Gohir.A04G032300' => 'ghi', 'Gohir.A05G061200' => 'ghi', 'Gohir.A05G161000' => 'ghi', 'Gohir.A06G103700' => 'ghi', 'Gohir.A06G128500' => 'ghi', 'Gohir.A07G033800' => 'ghi', 'Gohir.A10G158400' => 'ghi', 'Gohir.D01G049466' => 'ghi', 'Gohir.D01G049532' => 'ghi', 'Gohir.D05G063700' => 'ghi', 'Gohir.D05G163700' => 'ghi', 'Gohir.D05G352300' => 'ghi', 'Gohir.D06G104400' => 'ghi', 'Gohir.D06G132600' => 'ghi', 'Gohir.D07G037300' => 'ghi', 'Gohir.D10G110200' => 'ghi', 'Gorai.001G039000' => 'gra', 'Gorai.002G069400' => 'gra', 'Gorai.009G064400' => 'gra', 'Gorai.009G168800' => 'gra', 'Gorai.009G384400' => 'gra', 'Gorai.010G119600' => 'gra', 'Gorai.010G154500' => 'gra', 'Gorai.011G121400' => 'gra', 'HanXRQChr04g0097931' => 'han', 'HanXRQChr04g0124361' => 'han', 'HanXRQChr05g0152221' => 'han', 'HanXRQChr11g0328531' => 'han', 'HanXRQChr12g0356571' => 'han', 'HanXRQChr12g0364171' => 'han', 'HanXRQChr15g0494611' => 'han', 'HanXRQChr17g0560101' => 'han', 'Haze_06427' => 'cav', 'Haze_07707' => 'cav', 'Haze_07708' => 'cav', 'Haze_09437' => 'cav', 'Haze_16584' => 'cav', 'Haze_21371' => 'cav', 'Hma1.2p1_0242F.1_g100770' => 'hma', 'Hma1.2p1_0296F.1_g116910' => 'hma', 'Hma1.2p1_0458F.1_g157040' => 'hma', 'Hma1.2p1_0736F.1_g210740' => 'hma', 'Hma1.2p1_0898F.1_g234480' => 'hma', 'Hma1.2p1_2752F.1_g327900' => 'hma', 'HPP92_005490' => 'vpl', 'HPP92_005634' => 'vpl', 'HPP92_005647' => 'vpl', 'HPP92_009861' => 'vpl', 'HPP92_021774' => 'vpl', 'HPP92_024053' => 'vpl', 'HPP92_028220' => 'vpl', 'Lalb_Chr01g0006581' => 'lal', 'Lalb_Chr01g0012281' => 'lal', 'Lalb_Chr01g0016801' => 'lal', 'Lalb_Chr03g0030671' => 'lal', 'Lalb_Chr04g0262311' => 'lal', 'Lalb_Chr07g0183951' => 'lal', 'Lalb_Chr12g0202701' => 'lal', 'Lalb_Chr13g0296841' => 'lal', 'Lalb_Chr15g0089771' => 'lal', 'Lalb_Chr16g0383851' => 'lal', 'Lalb_Chr18g0059551' => 'lal', 'Lalb_Chr19g0134161' => 'lal', 'Lalb_Chr20g0109621' => 'lal', 'Lalb_Chr20g0121791' => 'lal', 'Lalb_Chr25g0286321' => 'lal', 'Lj1P841T23' => 'lonja', 'Lj3g0003954' => 'lja', 'Lj3g0008497' => 'lja', 'Lj3g0011515' => 'lja', 'Lj4g0000310' => 'lja', 'Lj4g0004157' => 'lja', 'Lj5C75T13' => 'lonja', 'Lj6g0003475' => 'lja', 'Lj8P155T72' => 'lonja', 'Lsat_1_v5_gn_1_29780' => 'lsa', 'Lsat_1_v5_gn_3_26840' => 'lsa', 'Lsat_1_v5_gn_4_53920' => 'lsa', 'Lsat_1_v5_gn_4_87360' => 'lsa', 'Lsat_1_v5_gn_7_104141' => 'lsa', 'Lsat_1_v5_gn_7_21680' => 'lsa', 'Lsat_1_v5_gn_9_5320' => 'lsa', 'Lsat_1_v5_gn_9_97440' => 'lsa', 'Manes.03G109400' => 'mes', 'Manes.04G110428' => 'mes', 'Manes.04G110500' => 'mes', 'Manes.04G110554' => 'mes', 'Manes.04G110581' => 'mes', 'Manes.11G059000' => 'mes', 'Manes.12G081300' => 'mes', 'Manes.15G087700' => 'mes', 'Manes.16G028900' => 'mes', 'Manes.16G132000' => 'mes', 'Manes.17G046600' => 'mes', 'MBI03_g07139_MAGBIO' => 'mbi', 'MBI06_g23078_MAGBIO' => 'mbi', 'MBI07_g30195_MAGBIO' => 'mbi', 'MBI15_g26067_MAGBIO' => 'mbi', 'MBI15_g38113_MAGBIO' => 'mbi', 'MD00G1116300' => 'mdo', 'MD03G1229000' => 'mdo', 'MD08G1052300' => 'mdo', 'MD10G1293000' => 'mdo', 'MD11G1249800' => 'mdo', 'MD15G1043200' => 'mdo', 'MD15G1140300' => 'mdo', 'MD17G1215500' => 'mdo', 'Medtr2g013950' => 'mtr', 'Medtr2g079120' => 'mtr', 'Medtr4g009950' => 'mtr', 'Medtr4g088695' => 'mtr', 'Medtr8g095470' => 'mtr', 'MELO3C002611.2' => 'cme', 'MELO3C003285.2' => 'cme', 'MELO3C007278.2' => 'cme', 'MELO3C016694.2' => 'cme', 'MELO3C016947.2' => 'cme', 'MELO3C023436.2' => 'cme', 'Migut.A00386' => 'egut', 'Migut.H01482' => 'egut', 'Migut.H02540' => 'egut', 'Migut.I00745' => 'egut', 'Migut.M00799' => 'egut', 'Migut.M01133' => 'egut', 'MSTRG.13198' => 'ama', 'MSTRG.14705' => 'ama', 'MSTRG.2474' => 'ama', 'MSTRG.25822' => 'ama', 'MSTRG.7338' => 'ama', 'MSTRG.9420' => 'ama', 'Nitab4.5_0000520g0080' => 'nta', 'Nitab4.5_0001241g0040' => 'nta', 'Nitab4.5_0001271g0090' => 'nta', 'Nitab4.5_0001336g0060' => 'nta', 'Nitab4.5_0001652g0050' => 'nta', 'Nitab4.5_0003072g0110' => 'nta', 'Nitab4.5_0003157g0050' => 'nta', 'Nitab4.5_0004013g0040' => 'nta', 'Nitab4.5_0009099g0040' => 'nta', 'Nn1g04128' => 'nnu', 'Nn1g06503' => 'nnu', 'Nn2g12463' => 'nnu', 'Nn5g27233' => 'nnu', 'Nn8g39588' => 'nnu', 'Nn8g40103' => 'nnu', 'Oeu004215.1' => 'oeu', 'Oeu018802.1' => 'oeu', 'Oeu033906.1' => 'oeu', 'Oeu051069.1' => 'oeu', 'Oeu056094.1' => 'oeu', 'Os01g0201250' => 'osa', 'Os01g0747800' => 'osa', 'Os04g0645200' => 'osa', 'Os05g0519000' => 'osa', 'Peaxi162Scf00006g00375' => 'pax', 'Peaxi162Scf00069g00162' => 'pax', 'Peaxi162Scf00553g00065' => 'pax', 'Peaxi162Scf00630g00001' => 'pax', 'Peaxi162Scf00651g00025' => 'pax', 'Peaxi162Scf01093g00210' => 'pax', 'PGR004G2586' => 'pgr', 'PGR044G2226' => 'pgr', 'PGR083G0401' => 'pgr', 'PGR102G1035' => 'pgr', 'PGR102G1622' => 'pgr', 'PGSC0003DMG400011562' => 'stu', 'PGSC0003DMG400014145' => 'stu', 'PGSC0003DMG400028645' => 'stu', 'PGSC0003DMG400029701' => 'stu', 'PGSC0003DMG400046831' => 'stu', 'Phvul.002G229300' => 'pvu', 'Phvul.002G279400' => 'pvu', 'Phvul.005G073000' => 'pvu', 'Phvul.006G184400' => 'pvu', 'Phvul.010G157300' => 'pvu', 'Phvul.011G158900' => 'pvu', 'Potri.001G399100' => 'ptr', 'Potri.004G044800' => 'ptr', 'Potri.004G134200' => 'ptr', 'Potri.006G266600' => 'ptr', 'Potri.006G266700' => 'ptr', 'Potri.011G053700' => 'ptr', 'Potri.011G118200' => 'ptr', 'Potri.018G016500' => 'ptr', 'Pp3c11_25170' => 'ppa', 'Pp3c7_7100' => 'ppa', 'Prupe.1G396600' => 'ppe', 'Prupe.3G091700' => 'ppe', 'Prupe.4G048900' => 'ppe', 'Prupe.4G180100' => 'ppe', 'Prupe.4G286700' => 'ppe', 'Psat1g204160' => 'psa', 'Psat5g242240' => 'psa', 'Psat7g040640' => 'psa', 'Psat7g114880' => 'psa', 'Psat7g257440' => 'psa', 'PSO017G0607' => 'pso', 'PSO170G6641' => 'pso', 'PSO210G0106' => 'pso', 'PSO210G1061' => 'pso', 'PSO541G0400' => 'pso', 'PSO675G7042' => 'pso', 'PSO761G0273' => 'pso', 'PSO832G1851' => 'pso', 'QL02p018016' => 'qlo', 'QL05p032125' => 'qlo', 'QL05p041150' => 'qlo', 'QL08p022137' => 'qlo', 'QL08p022152' => 'qlo', 'QL10p038179' => 'qlo', 'QL11p036111' => 'qlo', 'RcHm_v2.0_Chr2g0134771' => 'rch', 'RcHm_v2.0_Chr3g0484901' => 'rch', 'RcHm_v2.0_Chr5g0008641' => 'rch', 'RcHm_v2.0_Chr5g0033211' => 'rch', 'Rhsim02G0131100' => 'rsi', 'Rhsim02G0131800' => 'rsi', 'Rhsim06G0199600' => 'rsi', 'Rhsim08G0211200' => 'rsi', 'Rhsim10G0179800' => 'rsi', 'Sabra04G0027900' => 'sbr', 'Sabra04G0083900' => 'sbr', 'Sabra11G0103300' => 'sbr', 'Sabra16G0261700' => 'sbr', 'SalBow1G7370' => 'sbo', 'SalBow2G2726' => 'sbo', 'SalBow4G0457' => 'sbo', 'SalBow5G0380' => 'sbo', 'SalBow6G5411' => 'sbo', 'SalBow7G1145' => 'sbo', 'SalBow7G3085' => 'sbo', 'SalBow7G3985' => 'sbo', 'SalBow8G2053' => 'sbo', 'SalBow8G4407' => 'sbo', 'Sc03g0010090' => 'sci', 'Sc05g0007580' => 'sci', 'Sc16g0009850' => 'sci', 'Sed0001898' => 'sed', 'Sed0011059' => 'sed', 'Sed0013489' => 'sed', 'Sed0013801' => 'sed', 'Sed0014460' => 'sed', 'Sed0019592' => 'sed', 'Sed0024081' => 'sed', 'Sed0025047' => 'sed', 'SEGI_06192' => 'sgi', 'SEGI_18773' => 'sgi', 'SGA_v2.0_scaffold22G09694' => 'sas', 'SGA_v2.0_scaffold49G18298' => 'sas', 'SGA_v2.0_scaffold51G18839' => 'sas', 'SGA_v2.0_scaffold5G02723' => 'sas', 'SGA_v2.0_scaffold70G23677' => 'sas', 'SGA_v2.0_scaffold73G24257' => 'sas', 'SHI01681' => 'shi', 'SHI06562' => 'shi', 'SMO143G0168' => 'smo', 'SMO356G0569' => 'smo', 'Solyc02g078030.3' => 'sly', 'Solyc03g117500.1' => 'sly', 'Solyc07g063070.1' => 'sly', 'Solyc12g042730.1' => 'sly', 'Solyc12g088490.1' => 'sly', 'Sopen02g022870' => 'spe', 'Sopen03g036400' => 'spe', 'Sopen07g031260' => 'spe', 'Sopen12g021910' => 'spe', 'Sp1g24480' => 'spa', 'Sp3g13500' => 'spa', 'Sp4g16150' => 'spa', 'Sp5g35370' => 'spa', 'Sp6g15900' => 'spa', 'Sp6g34420' => 'spa', 'TAR375G0051' => 'tar', 'TAR381G1120' => 'tar', 'TAR381G1356' => 'tar', 'TAR383G0429' => 'tar', 'TAR624G0144' => 'tar', 'TAR625G0951' => 'tar', 'TAR625G1167' => 'tar', 'TAR626G0092' => 'tar', 'TAR626G0273' => 'tar', 'TAR626G0407' => 'tar', 'TAR627G0880' => 'tar', 'TAR629G0825' => 'tar', 'TAR636G3180' => 'tar', 'THA.LOC104799925' => 'tha', 'THA.LOC104800471' => 'tha', 'THA.LOC104810463' => 'tha', 'THA.LOC104811865' => 'tha', 'THA.LOC104812469' => 'tha', 'THA.LOC104812612' => 'tha', 'THA.LOC104814216' => 'tha', 'THA.LOC104815557' => 'tha', 'THA.LOC104818084' => 'tha', 'THA.LOC104819365' => 'tha', 'THA.LOC104820551' => 'tha', 'Thecc.01G146900' => 'tca', 'Thecc.06G031400' => 'tca', 'Thecc.06G185600' => 'tca', 'Thecc.07G091500' => 'tca', 'Thecc.09G013100' => 'tca', 'Thhalv10008551m.g' => 'esa', 'Thhalv10014514m.g' => 'esa', 'Thhalv10015866m.g' => 'esa', 'Thhalv10017206m.g' => 'esa', 'Thhalv10019207m.g' => 'esa', 'Thhalv10021466m.g' => 'esa', 'TPR.G12930' => 'tpr', 'TPR.G16341' => 'tpr', 'TPR.G16500' => 'tpr', 'TPR.G38652' => 'tpr', 'TPR.G7942' => 'tpr', 'TWI12G1123' => 'twi', 'TWI31G0768' => 'twi', 'TWI38G0258' => 'twi', 'TWI38G0327' => 'twi', 'TWI38G2262' => 'twi', 'TWI39G0407' => 'twi', 'TWI63G1795' => 'twi', 'TWI79G0484' => 'twi', 'unitig_21.g20218' => 'ugi', 'unitig_21.g20345' => 'ugi', 'unitig_22.g6232' => 'ugi', 'unitig_26.g9358' => 'ugi', 'unitig_699.g19101' => 'ugi', 'unitig_744.g24536' => 'ugi', 'unitig_749.g13655' => 'ugi', 'unitig_8.g3013' => 'ugi', 'unitig_899.g15566' => 'ugi', 'vmacro11870' => 'vma', 'vmacro19015' => 'vma', 'VMungo0251G0918' => 'vmu', 'VMungo0251G3049' => 'vmu', 'VMungo0331G1576' => 'vmu', 'VMungo0540G1346' => 'vmu', 'VMungo1080G1888' => 'vmu', 'VMungo1127G1657' => 'vmu', 'Zm00001eb068610' => 'zma', 'Zm00001eb120650' => 'zma', 'Zm00001eb153070' => 'zma', 'Zm00001eb293830' => 'zma', 'Zm00001eb338030' => 'zma', 'Zm00001eb353330' => 'zma', 'Zm00001eb432030' => 'zma' ) $gf_id = 'HOM05D000962' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000962' ) $data_identifier = 'HOM05D000962' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 2, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 17, 'gra' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'lal' => (int) 15, 'lonja' => (int) 3, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 10, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 9, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 0